Tool: Workflow for structural variants from long read sequencing data
6
gravatar for WouterDeCoster
9 months ago by
Belgium
WouterDeCoster40k wrote:

We (pluralis maiestatis) have developed a worfklow/pipeline to identify, annotate and visualize structural variation from long read sequencing data (Oxford Nanopore and PacBio).

This is based on Snakemake and can be found on GitHub: https://github.com/wdecoster/nano-snakemake

Integrated are recently developed aligners (minimap2 and ngmlr) and specific variant callers (sniffles, nanosv and npInv). More information about this can also be found in our preprint on structural variants in NA19240 PromethION data.

All feedback and contributions are welcome!

ADD COMMENTlink written 9 months ago by WouterDeCoster40k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 709 users visited in the last hour