Question: In silico functional comparison between two strains
0
gravatar for 112498262
9 weeks ago by
1124982620
1124982620 wrote:

Can anyone suggest a program that can be ran locally for pairwise functional comparison between strains?

next-gen gene • 146 views
ADD COMMENTlink modified 9 weeks ago by mike-zx110 • written 9 weeks ago by 1124982620

Can you clarify what you mean by functional comparison between genomes/proteomes?

ADD REPLYlink written 9 weeks ago by genomax59k
0
gravatar for mike-zx
9 weeks ago by
mike-zx110
Mexico/Service of Alimentary Quality SENASICA
mike-zx110 wrote:

Your question is rather broad, but if you are looking for something general and vast regarding bacterial strains I'd recommend looking into this site: https://www.patricbrc.org/ That platform is really good for bioinformatics starters since it operates fully on a graphic interface; there you can make an account and upload contigs of your strains to annotate them and compare virulence factors, drug targets, proteome, metabolic pathways and many other things. You can even upload raw reads and use the built-in assembler.

Hope this helps.

ADD COMMENTlink modified 9 weeks ago • written 9 weeks ago by mike-zx110

Thanks very much for your help.

ADD REPLYlink written 9 weeks ago by 1124982620
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1543 users visited in the last hour