Question: In silico functional comparison between two strains
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gravatar for 112498262
4 months ago by
1124982620
1124982620 wrote:

Can anyone suggest a program that can be ran locally for pairwise functional comparison between strains?

next-gen gene • 181 views
ADD COMMENTlink modified 4 months ago by mike-zx130 • written 4 months ago by 1124982620

Can you clarify what you mean by functional comparison between genomes/proteomes?

ADD REPLYlink written 4 months ago by genomax62k
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gravatar for mike-zx
4 months ago by
mike-zx130
Mexico/Service of Alimentary Quality SENASICA
mike-zx130 wrote:

Your question is rather broad, but if you are looking for something general and vast regarding bacterial strains I'd recommend looking into this site: https://www.patricbrc.org/ That platform is really good for bioinformatics starters since it operates fully on a graphic interface; there you can make an account and upload contigs of your strains to annotate them and compare virulence factors, drug targets, proteome, metabolic pathways and many other things. You can even upload raw reads and use the built-in assembler.

Hope this helps.

ADD COMMENTlink modified 4 months ago • written 4 months ago by mike-zx130

Thanks very much for your help.

ADD REPLYlink written 4 months ago by 1124982620
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