ubam to fastq?

Question

[DanielC]

Dear Friends,

Could you please suggest how to convert Ion-torrent ubam files to fastq? I have not found an effective answer on how to do this. What I am looking to do is to perform assembly of reads to get contigs. I would really appreciate.

Thanks much! DK

[Pierre Lindenbaum]

Hello DK!

Questions similar to yours can already be found at:

• unalign bam and convert to fastq
• Converting ION torrent .BAM to Fastq
• Bam to fastq conversion