Hi all, I'm trying to intersect a vcf file (as file -a) with a bed file (as file -b). I'm getting this error:
ERROR: Received illegal bin number 4294967295 from getBin call. ERROR: Unable to add record to tree.
After reading some previous similar questions, I made sure that my bed file is tab delimited and sorted.
When using the -sorted flag I got an error on my first position in the bed file:
Error: Sorted input specified, but the file file.bed has the following out of order record 1 2336225 2337283
Would appreciate any suggestions
My command line is:
bedtools intersect -a file_a.gz -b file_b.bed
I don't have headers in both files