Question: How would I do a rank sum glycolytic score from tcga data?
gravatar for mdc160030
21 months ago by
mdc1600300 wrote:

I am trying to create a graph similar to this:

enter image description here

The graph showing:

a comparison of glycolytic gene expression score between 2 different cancer phenotypes. Each tumor being assigned a rank for each glycolytic gene within the set of analyzed tumors. Summation of hte gene ranks was performed to generate the glycolytic expression score each patient.

I have mrna-seq data for patients separated by phenotype for a list of glycolytic genes, now I am not sure how to proceed with ranking these patients.

Any help would be greatly appreciated.

R gene • 356 views
ADD COMMENTlink modified 21 months ago by zx87549.4k • written 21 months ago by mdc1600300

See this post about boxplots with significance stars:

ADD REPLYlink written 21 months ago by zx87549.4k
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