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5.5 years ago
pragyan.somi8
•
0
Hey guys, I am trying to calculate the triplet sequence structure feature of miRNA. Is there any python package available for calculation of sequence-structure features? I need to calculate the given patterns:
Occurence of each nucleotide of miRNA sequence, followed by each triplets patterns of dot bracket notation of miRNA.
Triplet patterns are like "(((", "((.", "..(" etc.
in order to get thesse features, we need to work on two strings at a time. I tried finding out using basic python programming but searching for some appropriate method. if you any idea regarding this please write a comment, all the suggestion are important.
Thanking you in advance
