SimpleRleList to GRanges
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5.5 years ago
prabin.dm ▴ 260

Hi

I am using 'rtracklayer' package in R to import a ".wig" file. Its a Chip-Seq data.

After importing I get the SimpleRleList which I don't know how to use in "ChIPseekr". I am hoping converting to GRanges might help. Any help how to do it will be great.

here are my codes

temp <- import("GSM1382416_H2AX_MCF7_wz_E2_treat_afterfiting_all.wig.gz", trackline =FALSE)> newpeak = coverage(temp)

class(newpeaks) 
[1] "SimpleRleList" attr(,"package") 
[1] "IRanges"
ChIP-Seq rtracklayer • 1.3k views
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There was a simple solution. I got it. Thanks

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post the solution if you have found it.

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