Question: Qs about mutect2
gravatar for walker
6 months ago by
walker20 wrote:

Hello, everyone While using mutect2 to call SNV, I came up with this error:

java.lang.NumberFormatException: For input string: "."

And I used ValidateSamFile to valid bam I used, the ValidateSamFile reported an error like this:

ERROR: Record 250717557, Read name SRR6359395.137294991, NM tag (nucleotide differences) in file [1] does not match reality [0]

So, anyone can help me solve this problem?And why this happened? Thanks!

mutect2 wes gatk • 245 views
ADD COMMENTlink written 6 months ago by walker20
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