Can't locate Bio/SeqIO.pm
3
0
Entering edit mode
3.1 years ago

Hi everyone,

I'm totally new in programming, and I'm just trying to use Phyla_AMPHORA to get sequences of a specific marker, for all bacterial phyla to make a phylogenetic tree.

But after installing so many things, including Perlbrew and Bio Perl, I now get this message while trying to run the tests on Phyla_AMPHORA:

MacBook-Air-de-Zoe:Scripts ZoeMeziere$ perl MarkerScanner.pl -Phylum 3 TestData/ecoli.pep
Can't locate Bio/SeqIO.pm in @INC (you may need to install the Bio::SeqIO module) (@INC contains: /Library/Perl/5.18/darwin-thread-multi-2level /Library/Perl/5.18 /Network/Library/Perl/5.18/darwin-thread-multi-2level /Network/Library/Perl/5.18 /Library/Perl/Updates/5.18.2/darwin-thread-multi-2level /Library/Perl/Updates/5.18.2 /System/Library/Perl/5.18/darwin-thread-multi-2level /System/Library/Perl/5.18 /System/Library/Perl/Extras/5.18/darwin-thread-multi-2level /System/Library/Perl/Extras/5.18 .) at MarkerScanner.pl line 23.

Could you please tell me what I should do? And please remember I'm a total newbie, Thanks!! :))

AMPHORA Perl • 11k views
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4
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3.1 years ago
Joe 19k

cpanm Bio::Perl

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1
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3.1 years ago

Install the Bio::SeqIO module from cpan.

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