Question: Can't locate Bio/SeqIO.pm
0
gravatar for zoe.meziere
3 months ago by
zoe.meziere0 wrote:

Hi everyone,

I'm totally new in programming, and I'm just trying to use Phyla_AMPHORA to get sequences of a specific marker, for all bacterial phyla to make a phylogenetic tree.

But after installing so many things, including Perlbrew and Bio Perl, I now get this message while trying to run the tests on Phyla_AMPHORA:

MacBook-Air-de-Zoe:Scripts ZoeMeziere$ perl MarkerScanner.pl -Phylum 3 TestData/ecoli.pep
Can't locate Bio/SeqIO.pm in @INC (you may need to install the Bio::SeqIO module) (@INC contains: /Library/Perl/5.18/darwin-thread-multi-2level /Library/Perl/5.18 /Network/Library/Perl/5.18/darwin-thread-multi-2level /Network/Library/Perl/5.18 /Library/Perl/Updates/5.18.2/darwin-thread-multi-2level /Library/Perl/Updates/5.18.2 /System/Library/Perl/5.18/darwin-thread-multi-2level /System/Library/Perl/5.18 /System/Library/Perl/Extras/5.18/darwin-thread-multi-2level /System/Library/Perl/Extras/5.18 .) at MarkerScanner.pl line 23.

Could you please tell me what I should do? And please remember I'm a total newbie, Thanks!! :))

amphora perl • 359 views
ADD COMMENTlink modified 3 months ago by finswimmer9.8k • written 3 months ago by zoe.meziere0

cpanm Bio::Perl

ADD REPLYlink written 3 months ago by jrj.healey10k
0
gravatar for arup
3 months ago by
arup820
India
arup820 wrote:

Install the Bio::SeqIO module from cpan.

ADD COMMENTlink modified 3 months ago by RamRS20k • written 3 months ago by arup820
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