Question: SNP coordinates for all genome builds
1
gravatar for muraved
15 months ago by
muraved10
United States
muraved10 wrote:

I have a .map file which locates rs11171092 at 12:40654350. However, this does not match any of the usual builds:

hg18 12 53493738

hg19 12 55207471

hg38 12 54813687

Is there any way to look up ALL available information for a given RSID? This seems like a standard thing, but I cannot figure this out somehow.

snp gwas • 311 views
ADD COMMENTlink modified 15 months ago by Brice Sarver3.3k • written 15 months ago by muraved10
0
gravatar for Brice Sarver
15 months ago by
Brice Sarver3.3k
United States
Brice Sarver3.3k wrote:

Have you tried downloading the dbSNP VCF from the NCBI FTP, then correlating that with your rsIDs?

Edit: I'm seeing GRCh37p13 and GRCh38p7 with a quick browse; 36 may be available in the archive.

ADD COMMENTlink modified 15 months ago • written 15 months ago by Brice Sarver3.3k
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