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• Which Algorithm To Use For Ion-Channel/Pore Prediction From 3D-Structure?
  Dear friends, I would like to propose an alternative route (alternative pore) through the struct...
• 3D to voxel
  How do i generate a voxel matrix from a 3D structure of a gene present in .pdb format?
• Downloading all pdb files from RCSB
  Hello. Is there any way to download all the proteins 3D structure from rcsb? I want to download a...
• Protein 3D structure, Leucine Zipper
  Hi I want to incorporate Leucine zipper like properties in a protein 3D structure between 2 Heli...
• Aquaria: simplifying discovery and insight from protein structures
  Dear community, People interested in using 3D structures might like Aquaria, a new, free and ope...
• How To Find Similarity Between The 3D Protein Structures?
  Hi folks, I have 5 modeled protein structures from I-TASSER and one modeled protein structure us...
• 3d modeling of protein
  i want to predict the **3d (tertiary) structure** of a hypothetical protein **without using homol...
• Database Or Repository Containing All Protein Structures From Pdb In Docking Ready Format (Pdb, Mol2)
  I have some ligand structures and I would like to which proteins it could interact to. For that I...
• Gene 3D Data download
  How do i download the 3D structures of genes from ncbi given the gene name ex: MAPK3
• converting de-novo mutated protein structure to PDB/3D file-format/structure
  I have a mutated protein sequence. How can I convert my de-novo mutated protein structure to PDB/...
• Protein Structure Reconstruction
  I am new to protein structure reconstruction. Can anyone help to find a best program or tools to ...
• What is the best/mostcommon approach to model the effect of missense SNP on protein structure?
  What is the best approach to model the 3D structure of a mutant protein if we already have the 3d...
• Animation Of Changes In 3D Protein Conformation Due To Ph Change?
  Eric Martz was wondering on the Jmol mailing list if there are animations around of 3D conformati...
• Python Tool To Assign Secondary Structure Elements To A 3D/Pdb Structure
  Does anybody know if there's an a python alternative to STRIDE or DSSP for assigning secondary st...
• Are 3D Structures Of Proteins Similar In An Inhibitor Bound State And Unbound State
  I'm trying to compare the 3D distance between two AAs with their evolutionary conservation. Howe...
• Extract protein complex structures from pdb database
  I have a protein sequence with known structure. I want to download all the pdb structures of the ...