I am currently doing an assignment were I have the genome of a prokaryote.
In this assignment you will compare two methods of finding putative genes and evaluate their results. You will then further analyze the coding sequences by doing promoter predictions and comparing all the results. Use the naive ORF finding tool (getorf) and the combined approach tool (GeneMarkS) as outlined in the gene identification tools section. Compare both methods preferably using Artemis.
I used ORF finding tool and GeneMarkS so now I have two separate orf files to compare. Now I want to use Artemis but I don't get it. I have one genome, shouldn't I have something to compare it with, I mean isn't that the thing with Artemis?