Question: Where can i get virus nt database for blastn?
0
gravatar for yashwanthakumar
3 months ago by
yashwanthakumar0 wrote:

I have human genome samples and I want to find any bacterial or viral integration with my genome. But I couldnt find any nt database for virus.

virus blastn nt database genome • 156 views
ADD COMMENTlink written 3 months ago by yashwanthakumar0
0
gravatar for shenwei356
3 months ago by
shenwei3564.5k
China
shenwei3564.5k wrote:

follow this https://bioinf.shenwei.me/taxonkit/tutorial/

ADD COMMENTlink written 3 months ago by shenwei3564.5k

Viruses (top level including everything) have taxID: 10239.

If you need to restrict to a specific subset of viruses then use the NCBI Taxonomy browser to identify the taxID you would want to use with @shenwei's tutorial.

ADD REPLYlink modified 3 months ago • written 3 months ago by genomax62k
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