Question: Where can i get virus nt database for blastn?
0
gravatar for yashwanthakumar
7 weeks ago by
yashwanthakumar0 wrote:

I have human genome samples and I want to find any bacterial or viral integration with my genome. But I couldnt find any nt database for virus.

virus blastn nt database genome • 96 views
ADD COMMENTlink written 7 weeks ago by yashwanthakumar0
0
gravatar for shenwei356
7 weeks ago by
shenwei3564.3k
China
shenwei3564.3k wrote:

follow this https://bioinf.shenwei.me/taxonkit/tutorial/

ADD COMMENTlink written 7 weeks ago by shenwei3564.3k

Viruses (top level including everything) have taxID: 10239.

If you need to restrict to a specific subset of viruses then use the NCBI Taxonomy browser to identify the taxID you would want to use with @shenwei's tutorial.

ADD REPLYlink modified 7 weeks ago • written 7 weeks ago by genomax59k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1144 users visited in the last hour