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• Convertion Of Gff3 To Gtf
  How do I convert GFF file to a GTF file? Is there any tool available ?    
• GFF3 to GTF
  I'm tryning to convert a c elegans mirBase gff3 file to gtf file with gffread (by cufflinks) but ...
• gff3 to gtf
  Hi guys, I need to convert a gff3 file to gtf to use at tophat. I tried to convert using the g...
• phytozome gtf file
  Hi, I have the phytozome Maize gff3 file but when I use gffread to convert to gtf something goe...
• Join/Combine gff3 or gtf files
  Hi, I am trying to assemble/join gff3 or gtf files from 2 different organisms to use as a refere...
• How to make a custom gtf or gff3 file with a list containing transcript loci
  Hi everyone, I have a text file containing thousands of tomato transcript loci , such as "SL2.50c...
• Script for getting summary statistic of any genome using GTF or GFF3 ?
  Hi All, Nowadays, I am looking for a script for obtaining summary statistics such as; transcript...
• How to create custom gtf annotation file?
  Hi I am using RSEM (with bowtie2) for alignment then gene count. Using Refseq Annotation (gff3),...
• Differences between ensembl gtf files and gff3 file
  Is the gene_id attribute in the GTF files analogous to the Name attribute in the .gff3 file? Beca...
• What type of file is the size of the chromosomes and how do I get it?
  I am currently using files gff, gff3, gtf ... I work with commands by terminal ... mainly awk and...
• Can we make a counting program using GFF3 reference files?
  My understanding is that there are no counting programs using GFF3 files instead of GTF as refere...
• BED reference for Pombe
  Hi, I need to create a reference in 12 column BED format for S. pombe? Any one can help with tha...
• Difference between Ensembl annotation GTF and GFF3 files
  When downloading the annotation for a genome from Ensembl, there's a GTF and a GFF3 file availabl...
• Convert GTF file into GFF3 file
  Hello everyone ! I'm looking for an easy way to transform any gtf file to a gff3 file. I've tri...
• How to convert a gff3 to gtf?
  Hi all, I got a gff3 hsa miRNA annotation file from mirBase. I need to convert it to gtf . I tri...
• Converter for GFF file downloaded from NCBI to GTF
  Hi all, I have been looking at different gff3 to gtf converters, but cannot find a good one that...
• use gff3 file with featureCount
  I use tophat do the mapping and get .bam file. I try to use featureCount. Here are some question ...
• How to generate corresponding embl file with gff and fasta file of each scaffold in an assembly.
  Dear all, I have an assembly which has ~1000 scaffold, and has a gff3 and gtf file. I would like...