Question: tool for genome sequence manipulation
0
gravatar for dentepre
15 months ago by
dentepre0
dentepre0 wrote:

Hi, I;m looking for genome-browse like tool. I need to have a possiblity to load genome from fasta file, select region by adding primer sequences and add genes and rs... snps/another mutations. Mostly for clinical genomic purpose. I know IGV, but there is no way to add for example primers as separate track.

thanks d.

sequencing genome • 478 views
ADD COMMENTlink modified 15 months ago by oigl60 • written 15 months ago by dentepre0
1

why would there not be any option to load primers?

IGV simply reads and displays every gff (or other format) data in a track.

ADD REPLYlink modified 15 months ago • written 15 months ago by lieven.sterck6.7k
0
gravatar for Brice Sarver
15 months ago by
Brice Sarver3.3k
United States
Brice Sarver3.3k wrote:

Have you considered Geneious?

ADD COMMENTlink written 15 months ago by Brice Sarver3.3k
1

When you suggest a commercial/paid program it is useful to indicate that clearly. Majority of people are looking for free options and it can save them a few clicks.

ADD REPLYlink written 15 months ago by genomax76k

When I was in grad school, Geneious had a free version that could handle fasta sequences and primers. Looks like this isn't the case anymore.

ADD REPLYlink written 15 months ago by Brice Sarver3.3k
0
gravatar for oigl
15 months ago by
oigl60
oigl60 wrote:

To work with an annotated genome you can use UGENE Sequence View.

ADD COMMENTlink written 15 months ago by oigl60
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