mutual rank values for distance matrix formation for co-expression analysis
0
0
Entering edit mode
5.5 years ago

We know that earlier version of co-expression database showed that Pearson correlation coefficient (PCC) is used to calculate the mutual rank (MR) values for creating a co-expression network. However, the latest version has neglected the PCC values and displays only the MR data. So how can we use MR to form a Euclidean distance matrix in co-expression analysis

gene Assembly • 1.6k views
ADD COMMENT
0
Entering edit mode

I suppose, If you do have RAW expression values then also you can create co-expression matrix!

ADD REPLY
0
Entering edit mode

i want to create using mutual rank values from co-expression database. This is because correlation data from COEXPRESdb was clustered using Euclidean distance matrix. For which we require PCC values, but as i said latest version of COEXPRESdb gives only MR and no PRR column.

ADD REPLY
0
Entering edit mode

why can't you just use the MR values as a distance? It might not be subadditive

ADD REPLY

Login before adding your answer.

Traffic: 1932 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6