Question

Can someone suggest the tool to Calculate Tumor Mutation Burden from VCF file

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5.9 years ago

saranseth94 • 0

How to calculate TMB (Tumor Mutation Burden) from VCF file?. suggest some reliable tools

VCF tumor-mutational-burden R TMB • 5.1k views

ADD COMMENT • link updated 14 months ago by Ram 44k • written 5.9 years ago by saranseth94 • 0

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There is a similar thread in Biostars, please go through it. TMB Tumor Mutation Burden

ADD REPLY • link 5.9 years ago by Arup Ghosh 3.2k

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I can find no direct tools to calculate TMB only from VCF files.

ADD REPLY • link 5.9 years ago by saranseth94 • 0

score 0 · Answer 1 · 2021-06-04

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3.3 years ago

petrosd • 0

Have you tried maftools ?

ADD COMMENT • link 3.3 years ago by petrosd • 0