Question: Regarding settings on STRING db for PPI
0
gravatar for NS
24 months ago by
NS10
NS10 wrote:

Hi all,

On generating PPI on STRING database for my handful of proteins i) with a confidence cut off score of 0.7 ii) without any additional interactors, I am hardly getting a decent network. There seems to be hardly any interaction :( However on reducing the score or adding additional interactors , I am able to observe some interaction which can be explained.

In such a case, would you recommend setting my cutoff to a lower value of 0.6 or 0.5 ? Or would you recommend adding additional interactors? Which of these would be scientifically more reliable?

Thank you.

ppi • 746 views
ADD COMMENTlink written 24 months ago by NS10
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