Question: How plink calculates meta-analysis
gravatar for johnS
13 months ago by
johnS0 wrote:

I am trying to find the logic/calculation what is used in plink to calculate the meta analysis when run the following command

plink --meta-analysis study1.assoc study2.assoc study3.assoc

I checked the plink website but dint find details . Could someone help me with the calculations that are happening in plink to come up with that single file after meta analysis ?

plink meta-analysis metal gwama • 671 views
ADD COMMENTlink modified 12 months ago by Biostar ♦♦ 20 • written 13 months ago by johnS0

From the plink 1.9 website:

Given multiple PLINK-format association reports, --meta-analysis performs basic fixed-effects and random-effects meta-analysis of the data, writing results to plink.meta.

ADD REPLYlink modified 12 months ago • written 12 months ago by zx87548.8k
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