Entering edit mode
5.5 years ago
Shicheng Guo
★
9.4k
Hi All,
I want to annotate my SNVs with eQTL, how to build the customed database?
BTW, my current ANNOVAR annotation line is:
table_annovar.pl ../annovar/chr22.dose.vcf.avinput ~/hpc/tools/annovar/humandb/ --thread 4 -buildver hg19 --csvout -out ../annovar/chr22 -remove -protocol refGene,cytoBand,exac03,dbnsfp30a,gwasCatalog,wgRna,targetScanS,tfbsConsSites -operation gx,r,f,f,r,r,r,r -nastring . -otherinfo -polish -xref ~/hpc/tools/annovar/humandb/gene_fullxref.txt
Thansk.
