Question: RNA seq and machine learning
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gravatar for maryak
4 months ago by
maryak10
maryak10 wrote:

i am new to RNA seq analysis and i want to identify cancer related genes from RNA seq data .. can anybody guide me about the possible workflow if i use particle swarm optimization for feature reduction and SVM for classification.what input should i give to PSO algorithm?P values or z scores just normalized data?

rna-seq sequence gene • 348 views
ADD COMMENTlink written 4 months ago by maryak10

Which implementation of PSO are you hoping to use? - in R?; MATLAB?; something else? Have you read the manual?

ADD REPLYlink written 4 months ago by Kevin Blighe39k

in python.what kind of manual?

ADD REPLYlink written 4 months ago by maryak10

I mean, I presume that you have a 'package' / 'function' that can perform the PSO? Is there a manual (instructions) associated with this package / function?

ADD REPLYlink written 4 months ago by Kevin Blighe39k

No, there is no information regarding RNA Seq data and PSO.

ADD REPLYlink modified 4 months ago • written 4 months ago by maryak10
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