Question: RNA seq and machine learning
0
gravatar for maryak
13 months ago by
maryak20
maryak20 wrote:

i am new to RNA seq analysis and i want to identify cancer related genes from RNA seq data .. can anybody guide me about the possible workflow if i use particle swarm optimization for feature reduction and SVM for classification.what input should i give to PSO algorithm?P values or z scores just normalized data?

rna-seq sequence gene • 664 views
ADD COMMENTlink written 13 months ago by maryak20

Which implementation of PSO are you hoping to use? - in R?; MATLAB?; something else? Have you read the manual?

ADD REPLYlink written 13 months ago by Kevin Blighe52k

in python.what kind of manual?

ADD REPLYlink written 13 months ago by maryak20

I mean, I presume that you have a 'package' / 'function' that can perform the PSO? Is there a manual (instructions) associated with this package / function?

ADD REPLYlink written 13 months ago by Kevin Blighe52k

No, there is no information regarding RNA Seq data and PSO.

ADD REPLYlink modified 13 months ago • written 13 months ago by maryak20
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1314 users visited in the last hour