RNA seq and machine learning

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5.5 years ago

maryak ▴ 20

i am new to RNA seq analysis and i want to identify cancer related genes from RNA seq data .. can anybody guide me about the possible workflow if i use particle swarm optimization for feature reduction and SVM for classification.what input should i give to PSO algorithm?P values or z scores just normalized data?

rna-seq gene sequence • 1.6k views

ADD COMMENT • link 5.5 years ago by maryak ▴ 20

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Which implementation of PSO are you hoping to use? - in R?; MATLAB?; something else? Have you read the manual?

ADD REPLY • link 5.5 years ago by Kevin Blighe 87k

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in python.what kind of manual?

ADD REPLY • link 5.5 years ago by maryak ▴ 20

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I mean, I presume that you have a 'package' / 'function' that can perform the PSO? Is there a manual (instructions) associated with this package / function?

ADD REPLY • link 5.5 years ago by Kevin Blighe 87k

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No, there is no information regarding RNA Seq data and PSO.

ADD REPLY • link 5.5 years ago by maryak ▴ 20

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