Question: How to solve ufasta error while running MaSuRCA
0
gravatar for rkcpanigrahi
17 days ago by
rkcpanigrahi0 wrote:

I am running MaSuRCA 3.2.3 for genome assembly but getting some error as follows.

[Sat Nov 3 15:05:16 IST 2018] Processing pe library reads [Sat Nov 3 15:05:17 IST 2018] Average PE read length 150 [Sat Nov 3 15:05:18 IST 2018] Using kmer size of 105 for the graph MIN_Q_CHAR: 33 Estimated genome size: 340625642 [Sat Nov 3 15:05:18 IST 2018] Computing super reads from PE [Sat Nov 3 15:05:18 IST 2018] Super reads failed, check super1.err and files in ./work1/

Super reads failed, check super1.err and files in ./work1/ following the instruction i checked super1.err file

super1.err file contains :- super1.err my commands are as follows :-

masurca config -o assemble.sh -l /usr/lib64:/usr/lib

./assemble.sh

and the config file and assemble file is attached here.

Can you please help me out from this issue as soon as possible. thanks with regards

ADD COMMENTlink written 17 days ago by rkcpanigrahi0
1

Have you tried recompiling (rerunning install.sh)? Looks like ufasta is looking for GLIBC libraries that aren't there

ADD REPLYlink written 17 days ago by Philipp Bayer5.7k
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