I am running MaSuRCA 3.2.3 for genome assembly but getting some error as follows.
[Sat Nov 3 15:05:16 IST 2018] Processing pe library reads [Sat Nov 3 15:05:17 IST 2018] Average PE read length 150 [Sat Nov 3 15:05:18 IST 2018] Using kmer size of 105 for the graph MIN_Q_CHAR: 33 Estimated genome size: 340625642 [Sat Nov 3 15:05:18 IST 2018] Computing super reads from PE [Sat Nov 3 15:05:18 IST 2018] Super reads failed, check super1.err and files in ./work1/
Super reads failed, check super1.err and files in ./work1/ following the instruction i checked super1.err file
super1.err file contains :- my commands are as follows :-
masurca config -o assemble.sh -l /usr/lib64:/usr/lib
and the config file and assemble file is attached here.
Can you please help me out from this issue as soon as possible. thanks with regards