Question: Where to find location of sequenced exons in TCGA whole exome sequencing data
gravatar for Vasei
11 months ago by
Vasei30 wrote:

I want to analyze mutation distribution among the exons using MAF files from TCGA project. For this purpose I need to know the location of sequenced exons. Is there an easy way to find these locations? Do center which performed sequencing and sequencer technology determine these locations?

sequencing cancer tcga • 387 views
ADD COMMENTlink written 11 months ago by Vasei30

The Data Levels and Types page states:

Experimental protocol, including primer information, is contained in the metadata .xml file associated with each .bam file

ADD REPLYlink written 11 months ago by h.mon27k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 3572 users visited in the last hour