Error installing fls-bioinformatics-core/GFFUtils
1
0
Entering edit mode
3.1 years ago
deane • 0

I have read the instructions and search the internet but I can find no help for this one. I suspect its new. I used these two commands:

pip2 install -r https://raw.githubusercontent.com/fls-bioinformatics-core/GFFUtils/master/requirements.txt
pip2 install git+https://github.com/fls-bioinformatics-core/GFFUtils.git

The first one ran without an error. The second gave this:

Could not find a version that satisfies the requirement genomics-bcftbx (from GFFUtils==0.10.0) (from versions: )

No matching distribution found for genomics-bcftbx (from GFFUtils==0.10.0)

I am running Python 2.7.14 :: Anaconda, Inc. Running Ubuntu 18.04 64bit

Also, there seems to be much confusion on the forums about "gffutils" from Daler hosted here: https://pypi.org/project/gffutils/#description

Thanks for any help.

GFFUtils • 970 views
ADD COMMENT
0
Entering edit mode
3.1 years ago
h.mon 33k

It works fine if you don't try to pip-install directly from github (but my python is the system's python, not conda's):

git clone https://github.com/fls-bioinformatics-core/GFFUtils
cd GFFUtils/
pip2 install -r requirements.txt
pip2 install .

You can probably open a ticket reporting the issue.

ADD COMMENT

Login before adding your answer.

Traffic: 2120 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6