Question: Visualyzing an otu table
gravatar for life99945
5 months ago by
life999450 wrote:


I was given an otu table in excel .xlsx format. I'm trying to visualyze it somehow, but i can't import it to qiime through "biom convert" maybe because of some sort of symbol corruptions. I also have 6 txt files "l2 phylum.txt; l3 class.txt; l4 order.txt; l5 family.txt; l6 genus.txt; l7 species.txt" with information from excel otu file, but separated. Maybe i can use them somehow to get a visualization? How can i visualyze this otu table?

Thank you.

excel otu table • 290 views
ADD COMMENTlink modified 5 months ago by jrj.healey11k • written 5 months ago by life999450
gravatar for jrj.healey
5 months ago by
United Kingdom
jrj.healey11k wrote:
  1. Export table from excel as a tsv/csv.
  2. Convert the delimited file instead of the .xlsx with biom convert
  3. Scold whoever gave you an Excel file to analyse.
ADD COMMENTlink written 5 months ago by jrj.healey11k
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