Is it common for ATAC-peaks to be located in Repeat Masker annotated regions?
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2.4 years ago
a.rex ▴ 250

I have ATAC-reads that map to make peaks in repeatMasker + repeat modeller annotated regions? Is this common? Is this an artefact of mapping or perhaps regulatory elements that are transposon derived?

genome atac-seq • 560 views
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Like 10 reads or 1e+08, and what is the total read count and total peak number and peaks in these problematic regions ? You are lacking details.

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