I trying to load the fasta genome from D:\ but it seems doesn't allow me to read it from there (working with Jupyter notebook). I'm working on Windows 10 and I already changed the permissions for that specific folder, but still doesn't work.
Here the code:
import pyensembl from pyensembl import Genome ensembl = pyensembl.EnsemblRelease() data = Genome( reference_name='GRCh38', annotation_name='my_genome_features', gtf_path_or_url='C:\\Users\\User\\AppData\\Local\\pyensembl\\Homo_sapiens.GRCh38.94.gtf', transcript_fasta_paths_or_urls = "D:\\DATA\\ensembl\\fasta\\") data.index()
And the error:
PermissionError: [Errno 13] Permission denied: 'D:\\DATA\\ensembl\\fasta'
For the line of gtf_path_or_url everything works properly and can read the file , but I need to access to the fasta information to retrieve sequences and I don't have enough space in C to do it directly there. I couldn't find the solution.
Thank you in advance,