Question: Converting Illumina Data From 'Gerald' To Sam
2
Pierre Lindenbaum ♦ 124k wrote:
Hi all, I've been given an external hard drive containing a set of files mapped with some Illumina Tools (GERALD ?).
tail -3 s_3_2_export.txt
HWUSI-EAS454 14 3 120 16534 21510 0 2 TGTNNNNNNTNNTAACNNTNNNGGNNCNNTNNNCNNNNNCNNNNNNNCNNNANNGCNTNNTNCANNNCNCNNNTNC BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB QC N
HWUSI-EAS454 14 3 120 17941 21505 0 2 ACTNNNNNNCNNGCTANNANNNNCNNNNNTNNGANNNNNTNNNNNNNCNNNNNNATNCNNTNNTNNNCNCNNNCNA BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB QC N
HWUSI-EAS454 14 3 120 18005 21512 0 2 CTANNNNNNGNNTTCTNNTNNNNANNNNNCNNTANNNNNCNNNNNNNGNNNNNNCANCNNGNNCNNNCNANNNCNC BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB QC
where can I find a description of those columns ?
how can I convert it to SAM/BAM ?
thanks.
Just to add, some people call this format the "export" format, as the filenames tend with "_export".