Question: weird number in log2FC
0
gravatar for roghaiyeh.safari
9 weeks ago by
roghaiyeh.safari10 wrote:

does somebody knows why do I have weird numbers in base mean and log2FC. 4 points in one number? thanks

ENSOARG00000003154 356.920.477.363.281 239.408.657.153.029 0.243919505 94.649.345.411.828 2.94E-07 4.65E-03 ENSOARG00000000480 752.987.116.204.303 267.648.179.998.367 0.282750622 93.371.568.976.297 9.90E-07 7.83E-03

rna-seq • 131 views
ADD COMMENTlink modified 9 weeks ago by Antonio R. Franco3.9k • written 9 weeks ago by roghaiyeh.safari10

baseMean log2FoldChange lfcSE stat pvalue padj
ENSOARG00000003154 356.920.477.363.281 239.408.657.153.029 0.243919505 94.649.345.411.828 2.94E-07 4.65E-03

ADD REPLYlink modified 9 weeks ago • written 9 weeks ago by roghaiyeh.safari10

Did you use excel at some point in your analysis ? Its automatic formating can be a pain sometimes.

PS: I think your question lacks some context. Where does your data come from ? And what have you done with it to obtain those numbers ?

ADD REPLYlink modified 9 weeks ago • written 9 weeks ago by Carlo Yague4.4k

Looks like decimal delimiter and float delimiter are the same here. Both "."

ADD REPLYlink written 9 weeks ago by ATpoint12k
1
gravatar for roghaiyeh.safari
9 weeks ago by
roghaiyeh.safari10 wrote:

Thanks for answering.

I analyzed data with deseq2 and using write.table I extracted. When I open it in windows environment it looks like this. write.table(Shrunkorder , "Treated_vs_ControlshrunkOrder.txt",sep="\t",col.names=T,row.names=T, quote=F)

I noticed thattThe problem occures when I try to open it by excel.

Thanks

ADD COMMENTlink written 9 weeks ago by roghaiyeh.safari10
0
gravatar for Antonio R. Franco
9 weeks ago by
Spain. Universidad de Córdoba
Antonio R. Franco3.9k wrote:

Try to include dec="," as well in the write.table command, specially if your excel recognize the "," as the decimal digit

ADD COMMENTlink modified 9 weeks ago • written 9 weeks ago by Antonio R. Franco3.9k
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