Select the transversions only from SNP data set

Question

[SOHAIL]

Hi everybody,

I wanna perform the F3-statistics and D-statistics on my data set, is there any way to select the transversions only from my snp call set, my data set is in plink bed/bim/fam file format..

thanks in advance!

[Danila Kostin]

Hi Sohail,

I just faced with rather similar problem. I have a set of whole-genome fasta sequenses and I need to restrict my analysis for transversion only. Despite there is no answers in this topic, have you find solution for this task? If so, please let we know.