Question: Is it possible to retrieve STRING data base ids using Uniprot.ws in R?
0
gravatar for ivansilbern
11 days ago by
ivansilbern0 wrote:

Hello Everyone,

Does anybody know if it is possible to get STRING data base ids using Uniprot.ws package in R? When checking for available columns() I do not see anything similar to STRING or STRING_ID, but may be it is hiding under some other names or is there another way to get them?

Thank you a lot for helping!

Best regards, Ivan

R • 50 views
ADD COMMENTlink written 11 days ago by ivansilbern0

You can use the Ensemble protein ids form UniProt to fetch STRING DB data.

Example UniProt KB links: https://string-db.org/network/9606.ENSP00000265724

9606 is the organism id and ENSP00000265724 is the protein identifier.

ADD REPLYlink written 11 days ago by arup660
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1305 users visited in the last hour