Question: The order of part processions of RNA-Seq data
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gravatar for 1106518271
8 months ago by
110651827160
110651827160 wrote:

From the bam file file.bam (mapping by star) to htseq-count input data:

What's the order of the following steps in general?

a. sorted file.bam by name to get file.sorted.bam
b. index the file.bam or c. index the file.sorted.bam
d. get unique mapping reads from ?.bam

Thanks in advance!

rna-seq • 241 views
ADD COMMENTlink modified 8 months ago by WouterDeCoster40k • written 8 months ago by 110651827160
4
gravatar for WouterDeCoster
8 months ago by
Belgium
WouterDeCoster40k wrote:

Please follow guidelines such as:

RNA-Seq workflow: gene-level exploratory analysis and differential expression

ADD COMMENTlink written 8 months ago by WouterDeCoster40k
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