Question: The order of part processions of RNA-Seq data
0
gravatar for 1106518271
27 days ago by
110651827150
110651827150 wrote:

From the bam file file.bam (mapping by star) to htseq-count input data:

What's the order of the following steps in general?

a. sorted file.bam by name to get file.sorted.bam
b. index the file.bam or c. index the file.sorted.bam
d. get unique mapping reads from ?.bam

Thanks in advance!

rna-seq • 102 views
ADD COMMENTlink modified 27 days ago by WouterDeCoster35k • written 27 days ago by 110651827150
3
gravatar for WouterDeCoster
27 days ago by
Belgium
WouterDeCoster35k wrote:

Please follow guidelines such as:

RNA-Seq workflow: gene-level exploratory analysis and differential expression

ADD COMMENTlink written 27 days ago by WouterDeCoster35k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1085 users visited in the last hour