I was wondering whether there was a way to see the total number of genes that make up every panther pathway category? Just wondering about relative enrichment and if its just an artifact of vastly different numbers of genes that comprise every category? Thanks!
I am not sure if this helps or not, but since the GOIDs are from GO consortium, maybe you can search for the GO term of your interest say- GO:0043066, and then this navigates you to the page with links to gene and gene products, ontology etc. And from there you can select gene and gene products and navigate to the page which displays all the genes in under this GO term and there you can filter for organism, type of product etc.