Ive been using R interface to the Enrichr tool. It works well, but for some (very few) gene-list - database combinations I get errors:
Error in scan(file = file, what = what, sep = sep, quote = quote, dec = dec, : line yyy did not have zzz elements
with yyy being for example 1 or 109 and zzz - 2 or 9. After removing offending database from query, everything goes well.
Due to random nature of the errors, I dont think my input or database itself is a problem.
Here is a function that I am using: https://github.com/AdrianS85/varia/blob/temp4/Working_with_RRBS_data.r#L109-L158 and an exemplary input file: https://github.com/AdrianS85/varia/blob/master/i_vs_rest_overview_placenta_enrich_gene_list.txt
Does anyone have any ideas?