I want to find out if it is possible to filter the size of structural variants using the -x options.
In the Pindel documentation -x indicates the maximum size of structural variations to be detected (1=128, 2=512, 3=2,048, 4=8,092, 5=32,368, 6=129,472, 7=517,888, 8=2,071,552)
Say I wanted only variants greater than 1000bp? Does anyone know if there is a way to do this? Thanks