Question: Is there some tools can convert a table file or a csv file in to a vcf file?
gravatar for Zeason
3 months ago by
Zeason0 wrote:

I just want to find a tools that can handle the VCF file , or it can convert something else into a VCF file. Because i need to do some modification about my VCF file , such as deleting some SNP site.

snp • 171 views
ADD COMMENTlink written 3 months ago by Zeason0

Hello Zeason ,

please be more specific in describing your task. This helps a lot for given goal-oriented answers.

A standard tool for working with vcf files is bcftools.

ADD REPLYlink written 3 months ago by finswimmer9.8k

i just find the tools i want couple hours ago thanks a lot The tools i used is VariantsToTable in GATK.

ADD REPLYlink modified 12 weeks ago • written 3 months ago by Zeason0

Then share it with the community please. It might help others.

ADD REPLYlink written 3 months ago by ATpoint13k
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