Hi, I'm dealing with TCGA data, but when I visualized my interested genes with TCGAnalyze_SurvivalCoxNET function, I was informed an error by R. Here is my code and error:
TabCoxNet <- TCGAvisualize_SurvivalCoxNET(dataClin, dataFilt, Genelist = rownames(dataSurv), scoreConfidence = 700, org.Hs.string = org.Hs.string, titlePlot = "Case Study n.1 dnet") Error in `[.data.frame`(x, r, vars, drop = drop) : undefined columns selected
I have noticed that there was a similar post in Github[https://github.com/BioinformaticsFMRP/TCGAbiolinks/issues/99], sadly, no any good suggestion was put forward. Maybe someone could solve this today? Any suggestion will be thanked!