I have a lot of part can not install in R

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5.9 years ago

mikysyc2016 ▴ 120

When I try to install RSkittleBrewer/org.Hs.eg.bd/Deeptools/Ngsplot/SeqPlots always get this kind of informations(below). Did someone have a good way to deal with? Thanks!

Warning in install.packages :
  package ‘org.Hs.eg.bd’ is not available (for R version 3.5.0)

R • 1.5k views

ADD COMMENT • link 5.9 years ago by mikysyc2016 ▴ 120

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How are you trying to install org.Hs.eg.db (note it is .db and not .bd)? Are you using BioConductor?

ADD REPLY • link 5.9 years ago by h.mon 35k

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I use R studio, I also can not install Bioconductor.

ADD REPLY • link 5.9 years ago by mikysyc2016 ▴ 120

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Are you following the instructions from BioConductor site? Namely:

source("https://bioconductor.org/biocLite.R")
biocLite()

ADD REPLY • link 5.9 years ago by h.mon 35k

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yes, but it doesn't work for me.

ADD REPLY • link 5.9 years ago by mikysyc2016 ▴ 120

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You should tell us what happens, not just 'it does not work'.

ADD REPLY • link 5.9 years ago by WouterDeCoster 47k

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in R studio console, type : setRepositories(). A repository list would appear and request you to select repositories you would like to use (with prompt 1:). Type: 1 2 3 4 5 and press enter. Then type install.packages("org.Hs.eg.db") and wait. At first, few error messages appear, ignore them. Then it starts installing package. Make sure that rstudio/package installer access to the installation folder.

ADD REPLY • link 5.9 years ago by cpad0112 21k

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Hi, Thank you so much for your valuable guidance, your answer was reasonable and accurate.