I have a set of ATAC-peaks which I would like to correlate, somehow, with the level of H3K4me1 flanking these peaks? This is because, H3K4me1 is a well known marker for active enhancers. Would people recommend to do a Pearson correlation between ATAC-peaks read level and H3K4me1 read level flanking the peaks? How can you go about doing this?
Question: How can I correlate ATAC-seq peak signal with enhancer ChIP-seq mark signal (H3K4me1)?
12 weeks ago by
a.rex • 170
a.rex • 170 wrote:
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