How to perform fusion search with Hisat2?
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3.2 years ago

I need fusion genes, but also need to use hisat, I don't know how to do fusion search with hisat.

hisat fusion search • 1.9k views
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Thanks @Kevin Blighe , I visited the link you provided, but there is no any solution about the problem, they are also still trying to develop it. Yeah At least I came to know that they are still developing it , not yet developed. Thanks.

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@Kevin Blighe Thank you, I will try on those packages mentioned in the nature article.

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3.2 years ago

I do not believe it is yet implemented in HISAT2: https://github.com/DaehwanKimLab/hisat2/issues/8

Other fusion detection programs: A: Gene Fusion Detection: Rna-Seq Data

Kevin

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