Timeout was reached

Question

[Morteza Hadizadeh]

Hi everyone How to solve Timeout was reached error: Connection timed out after 10000 milliseconds Thanking you in anticipation.

[Kevin Blighe]

Hello, it would really help that you informed us of the service to which you are attempting to connect. Paste commands, URLs, service names, etc.

[Morteza Hadizadeh]

Dear Kevin BligheIn, I'm sorry for the delay in replying, your criticism is reasonable and correct, I apologize for this. During microarray analysis, I encounter below error rafter loading GEOquery package.

gset <- getGEO(dataset, GSEMatrix =TRUE, AnnotGPL=TRUE, destdir = "C:/R Database/TGFb /Data/") Timeout was reached error: Connection timed out after 10000 milliseconds

How to resolve this error? I would be very pleased if you could guide me.

[Kevin Blighe]

What is the value of dataset?

[Kevin Blighe]

Cross-posted: https://support.bioconductor.org/p/115366/

Note that the first argument should be:

GEO, A character string representing a GEO object for download and parsing. (eg., 'GDS505','GSE2','GSM2','GPL96')

Where you have dataset, you should have a character ID representing the ID of the GEO study that you want to obtain.