How can I find SNPs between two Genomes?
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5.6 years ago
Zeason ▴ 10

Here I have two fasta files of two genomes.

I want to find SNPs between them , how can I do it ?

Can GATK do it ?

genome snp gatk fasta • 3.4k views
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Are they the same species, just differing by SNPs?

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yes,they are same plant species. but they are different lines.

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5.6 years ago
Tm ★ 1.1k

Have a look at similar previous post. And if your aim is to look into difference between both the genome then you can use Nucmer from Mummer followed by Assemblytics.

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thanks a lot.I will try it.

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