snpSift can annotate vcf file from other database vcf, and
-info option to annotate specific fields.
You can use the -info command line option if you only want select only a subset of fields from db.vcf file.
I need some examples to show me how to use
-info correctly.Example, my
clinvar database vcf file:
#CHROM POS ID REF ALT QUAL FILTER INFO .....ALLELEID=446939;CLNDISDB=MedGen:C4015293,OMIM:616126,Orphanet:ORPHA319563;CLNDN=Immunodeficiency_38_with_basal_ganglia_calcification;..........ANN=A|missense_variant|MODERATE|ISG15|ISG15|transcript|NM......
If I don't want
ANN fields because My vcf file already has, how do I do with
If you don't have solutions for my case, but you did use
-info before, It would be appreciate to show me your example command. Thanks.