Should the values of pairwise genetic distances and Fst be somewhat similar?
0
2
Entering edit mode
5.4 years ago
akang ▴ 110

I have used an R package called Adegenet to calculate pairwise Fst and pairwise genetic distances from an alignment file. But both the values are completely different.

matFst <- pairwise.fst(mydata,res.type="matrix") #pairwise Fst
temp <- pairDistPlot(mydata, other(mydata)$pop) # pairwise genetic distance

Example, my maximum pairwise genetic distance between two populations is 7% whereas Maximum Fst is 80%. Can somebody explain me more on that? TIA

adegenet R • 1.5k views
ADD COMMENT

Login before adding your answer.

Traffic: 2664 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6