Question: Align two single cell experiments
1
gravatar for elb
2.1 years ago by
elb200
Torino
elb200 wrote:

Hi guys, I'm trying to align two single cell experiments using the Seurat package. According to the tutorial here: https://satijalab.org/seurat/Seurat_AlignmentTutorial.html the standard pipeline first performs the FindVariableGenes step and then creates an object from the union of the two datasets. I would like to perform the regression on mt-genes and on cell cycle genes. My question is: when to perform the regression? On the single objects independently before the union or on the object from the union?

Thank you in advance!

single cell job R • 771 views
ADD COMMENTlink modified 2.1 years ago by Michael Dondrup48k • written 2.1 years ago by elb200
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