Question: Align sequences against reference MSA
0
gravatar for kristjan
11 months ago by
kristjan150
Estonia
kristjan150 wrote:

What program can align a group of unaligned sequences against a large multiple sequence alignment? I need my sequences to have the same alignment length as the reference alignment, but they cannot be combined (like MAFFT -add does).

msa alignment • 402 views
ADD COMMENTlink modified 11 months ago by Biostar ♦♦ 20 • written 11 months ago by kristjan150

Do you mean align one or more sequences to a consensus sequence generated using MSA?

ADD REPLYlink written 11 months ago by Sej Modha4.5k

I believe CLUSTAL's profile alignment mode can do this (you align new sequences against the existing alignment)

ADD REPLYlink written 11 months ago by Joe15k
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