Question: Align sequences against reference MSA
gravatar for kristjan
11 months ago by
kristjan150 wrote:

What program can align a group of unaligned sequences against a large multiple sequence alignment? I need my sequences to have the same alignment length as the reference alignment, but they cannot be combined (like MAFFT -add does).

msa alignment • 402 views
ADD COMMENTlink modified 11 months ago by Biostar ♦♦ 20 • written 11 months ago by kristjan150

Do you mean align one or more sequences to a consensus sequence generated using MSA?

ADD REPLYlink written 11 months ago by Sej Modha4.5k

I believe CLUSTAL's profile alignment mode can do this (you align new sequences against the existing alignment)

ADD REPLYlink written 11 months ago by Joe15k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1374 users visited in the last hour