Where can I find expression data for APOE gene in humans?
3
0
Entering edit mode
5.4 years ago

I'm trying to reference this data for an undergraduate course, but I'm not really sure where to find it. I have looked for something I could possibly find through literature, but can't find anything definite. Is this data something that is available through a database?

genome alignment expression data • 1.1k views
ADD COMMENT
1
Entering edit mode

You might try filtering/searching GEO datasets for the different ApoE isoform combos, though be careful averaging across datasets given their inherent differences in experimental design and approach to quantifying ApoE isoforms.

e.g https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE102956

ADD REPLY
2
Entering edit mode
5.4 years ago

Take a look at the GTEx database

ADD COMMENT
2
Entering edit mode
5.4 years ago

You can search for your gene in Expression atlas, where you can see its basal expression and it's expression in certain experimental conditions.

ADD COMMENT
1
Entering edit mode
5.4 years ago
vkkodali_ncbi ★ 3.7k

Some Expression data is available in NCBI Gene as well. For example, search for human apoe in the NCBI Gene portal and navigate to the APOE gene page where you will find a bar graph of expression data in the 'Expression' section. You can choose one of the four different large scale studies to view their data by clicking on the drop-down menu at the top left corner of the 'Expression' section. Finally, you can get further details such as RPKM values, read counts, links to SRA and BioSample, and the ability to download the data by clicking on the 'see details' link at the top right corner.

ADD COMMENT

Login before adding your answer.

Traffic: 1569 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6