Question: Gene cluster visualization
0
gravatar for Bhushan Dhamale
19 months ago by
National Institute of Immunology, New Delhi, India
Bhushan Dhamale0 wrote:

I have NRPS gene clusters isolated from running various bacterial genomes through antiSMASH. I need to generate a visualization of the gene clusters with color-coded annotation of their constituent genes as in the image in the link below. I have already gone through the methods in several papers but I was unable to find a description of how the image was generated. I have also tried various online gene cluster visualization programs, but they do not seem to fit my purpose. Could someone please point me to a program/package that would take gene clusters to generate an image similar to the one in the link below?

https://drive.google.com/file/d/1vP7pjst0Vz_utnLMHFsGWSwn64UfCB02/view?usp=sharing

ADD COMMENTlink modified 19 months ago • written 19 months ago by Bhushan Dhamale0

Adobe Illustrator, or any vector-based drawing tools, could do it. Just fit the pixels/arrow sizes to the gene scale in bp.

ADD REPLYlink written 19 months ago by Vitis2.4k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1476 users visited in the last hour