dbNSFP3.5a annotation. Error "Field name not found"

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5.4 years ago

marta.rusmini ▴ 20

Hi! I'm trying to annotate with dbNSFP3.5a (by using SnfSift) but I cannot solved an error. Can anyone help me? the error is " Error: Field name 'Uniprot_acc' not found" and the script I launched is java -jar /path/to/snpEff/SnpSift.jar dbnsfp -db /path/to/dbNSFP3.5a/dbNSFP3.5a.txt.gz \/myfile.vcf > myfile_dNSFP.vcf (I have the tbi file in the same directory). I omitted any -f option in order to see if the program basically works and these are the default fields that should be added: - Uniprot_acc - Interpro_domain - SIFT_pred - Polyphen2_HDIV_pred - Polyphen2_HVAR_pred - LRT_pred - MutationTaster_pred - GERP++_NR - GERP++_RS - phastCons100way_vertebrate - 1000Gp1_AF - 1000Gp1_AFR_AF - 1000Gp1_EUR_AF - 1000Gp1_AMR_AF - 1000Gp1_ASN_AF - ESP6500_AA_AF - ESP6500_EA_AF

any suggestion?

next-gen • 968 views

ADD COMMENT • link updated 5.3 years ago by Biostar 20 • written 5.4 years ago by marta.rusmini ▴ 20

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