Question: (Closed) How to extract fasta sequence from BAM files generated using BWA
gravatar for soleimani_homa
19 months ago by
soleimani_homa0 wrote:

Hi everyone,

I need to convert a BAM to a FASTA. BAM file generated by BW aligner. I need forward and reverse sequences separately in fasta format.

I appreciate any of your solutions. Thanks a lot!

sequencing bam alignment fasta • 1.0k views
ADD COMMENTlink written 19 months ago by soleimani_homa0

Hello soleimani_homa!

Questions similar to yours can already be found at:

We have closed your question to allow us to keep similar content in the same thread.

If you disagree with this please tell us why in a reply below. We'll be happy to talk about it.


PS: There are many questions on that both on Biostars and google. Have a look at samtools fastq or bedtools bamtofastq, and then fastq to fasta conversion, or some of the posts above for previous solutions.
ADD REPLYlink modified 19 months ago • written 19 months ago by ATpoint36k
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